Research group · CNS
Computational Neuroscience Group
Building mathematical models of neural circuits and cognitive processes to understand how the brain computes, learns, and adapts.
Overview
The Computational Neuroscience Group develops quantitative theories of neural computation at multiple scales: from the biophysics of ion channels and dendritic integration, through the dynamics of recurrent microcircuits, to the large-scale network mechanisms underlying perception, memory, and executive control. The group is equally at home with analytical methods from dynamical systems theory, statistical mechanics, and information theory as it is with machine-learning-inspired models and direct data fitting to electrophysiological recordings.
A defining feature of the group's programme is the close interplay between theory and data. Collaborators at partner neuroscience institutes supply spike-train recordings, calcium imaging, and EEG datasets; the group's models are constrained by and tested against this empirical evidence. Where models succeed, they generate concrete, experimentally testable predictions. This reciprocal workflow has produced a series of experimentally validated theories of working memory, attention gating, and sensory adaptation.
The group works in close collaboration with the Perception & Decision Lab and the Neural Engineering Group within the Cognitive & Neural Science division, and draws heavily on the Meridian HPC Cluster for large-scale simulations.
Research themes
- Recurrent neural network models of working memory and prefrontal dynamics
- Theory of predictive coding and hierarchical inference in cortical circuits
- Spike-timing-dependent plasticity rules and their role in unsupervised learning
- Low-dimensional manifold structure in population activity during motor planning
- Attractor network models of hippocampal memory consolidation
- Normative theories of perception under metabolic constraints (efficient coding)
Current projects
Active research programmes, 2024–2027
Project · VX-CNG-01
CortexFlow: Dynamics of Prefrontal Working Memory
Developing a family of low-rank recurrent network models that capture the transient and persistent activity patterns observed in primate prefrontal cortex during delay-period tasks. The project uses latent variable methods to extract geometry from multi-electrode recordings supplied by partner labs.
Funding: VIAS Research Excellence Grant · 540,000 cr
Project · VX-CNG-02
PredictBrain: Hierarchical Predictive Coding Models
Formalising the predictive coding framework as a biologically constrained inference algorithm, implemented in multi-layer spiking networks. Tests the theory's predictions against laminar LFP data from visual cortex during natural scene processing.
Funding: External consortium grant VX-PRED-24 · 780,000 cr
Project · VX-CNG-03
MemGeo: Low-Dimensional Structure in Hippocampal Ensembles
Characterising the geometric and topological properties of hippocampal population codes using persistent homology and Riemannian manifold learning. Aims to distinguish encoding schemes for episodic and semantic memory in rodent and human datasets.
Funding: VIAS–Industry Collaborative Fund · 295,000 cr
Project · VX-CNG-04
AdaptSyn: Synaptic Plasticity Rules from First Principles
Deriving biophysically grounded learning rules that reconcile STDP phenomenology with the constraints of metabolic efficiency and synaptic stability. Benchmarked on a suite of unsupervised representation-learning tasks using cortical datasets.
Funding: VIAS Graduate School Fellowship · 115,000 cr
Selected publications
- Okoro H., Petrov A., Jang S. "Rank-two recurrent networks reproduce the geometry of prefrontal working memory." Veyra Neural Computation 36(4), 2024. DOI: 10.veyra/VX-4487
- Okoro H., Mwanza C. "Predictive coding as variational inference in layered spiking networks." VIAS Journal of Theoretical Neuroscience 11, 2023. DOI: 10.veyra/VX-4261
- Jang S., Okoro H. "Manifold curvature distinguishes place-cell and grid-cell representations." Veyra Neuroscience Letters 8(2), 2023. DOI: 10.veyra/VX-4102
- Petrov A., Okoro H., Löffler G. "Synaptic weight distributions under metabolic constraints: a maximum-entropy approach." VIAS Computational Biology 19, 2022. DOI: 10.veyra/VX-3877
- Okoro H. "Attractor basins and retrieval capacity in sparse Hopfield networks with structured connectivity." Veyra Neural Dynamics 4(3), 2021. DOI: 10.veyra/VX-3661
- Mwanza C., Okoro H. "Efficient coding predicts surround suppression in V1 orientation tuning curves." VIAS Vision Research Reports 6, 2020. DOI: 10.veyra/VX-3414
People
Postdoctoral researchers: Dr. Aleksei Petrov, Dr. Chioma Mwanza, Dr. Sunwoo Jang, Dr. Gerrit Löffler.
PhD students: Yolanda Ferreira, Mihail Sturza, Nneka Achebe, Daisuke Ono, Roos Hartman, Carsten Kühl, Beatriz Moreira, Ezra Steinman, Linh Truong.
Research staff: Dr. Rosario Vidal (data engineer), Piotr Szymański (HPC liaison), Amara Diallo (lab manager).